[1]Zhiyuan Yuan,Wentao Pan, et al.SODB facilitates comprehensive exploration of spatial omics data.Nature Methods,2023.（一作兼通讯，NatureMethods亮点文章）

[2]Zhiyuan Yuan,Yisi Li, et al. SOTIP is a versatile method for micro-environment modeling with spatial omics data.Nature Communications, 2022.（一作兼通讯）

[3]Zhiyuan Yuan,Qiming Zhou, et al. SEAM is a spatial single nuclear metabolomics method for dissecting tissue microenvironment.Nature Methods, 2021.（一作，Nature Methods专评，2021年中国生物信息学十大进展）

[4]Zhiyuan Yuan,Jianhua Yao.Harnessing Computational Spatial Omics to Explore the Spatial Biology Intricacies.Seminars in Cancer Biology, 2023.（一作兼通讯）

[5] Rongbo Shen, …,Zhiyuan Yuan,et al. Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding.Nature Communications,2022.

学术服务：

独立担任Nature Methods、Nature Metabolism、Cell Systems、Nature Communications、Cell Reports、Genome Biology等期刊审稿人。